Hidden Food Allergens: The Sneaky Culprits Making Your Life Harder
- Trillitye Paullin, Ph.D.

- Jun 10, 2022
- 8 min read
Updated: Sep 8
Whether you're new to the food allergy world or seasoned, finding out about "hidden" allergies feels like a punch in the gut. You've done a million things to keep your baby safe: drastically changed your diet, stopped taking your multivitamin and going out to eat, and countless other sacrifices.
Then you find out one of your medications contains a soy derivative. Or the "safe" protein mix you've been using DOES have a form of dairy in it. You feel defeated, and we've all been there.

What Are Hidden Food Allergens and Why Are They So Sneaky?
"Hidden food allergens" are broken-down forms of food proteins that, despite their tiny size, can still cause an allergic reaction [1]. Your baby may react to these allergens directly through solid foods or indirectly through your breastmilk.
We know pitfalls like this make the road so much harder. You're exhausted, and just trying to keep your baby healthy and safe. Free to Feed educates and empowers families like yours with knowledge and research surrounding baby food allergies.
Allergens hide and sneak by on labels for everyday products far too often. Why? Food proteins that are broken down or highly processed often don't cause allergic reactions for most people, so manufacturers aren't required to call them out clearly [2].
The Food and Drug Administration (FDA) now labels the top 9 food allergies (just adding sesame in 2021) — but here's the kicker: these requirements were designed for the adult population, not infants [3]. Keep in mind that most babies do outgrow their food allergies, but in the meantime, look out for the most common missing infant food allergies on that list: oats, legumes, rice, chicken, and beef [4].
Since the FDA doesn't have to label highly processed forms of protein, your life as a food allergy parent has even greater challenges. For example, products can be labeled "non-dairy" when they contain casein...a milk protein! It absolutely can cause reactions in babies with dairy allergies, whether from solid foods or breastfeeding. cue eye roll now
The scary truth? Food anaphylaxis rates are climbing partly because people consume foods they think are "safe" when they're actually contaminated with allergens [5]. It happens easily and it's terrifying, but knowing where they hide provides valuable insight for your family's safety.

The Most Common Hiding Spots for Food Allergens
Remember, we're here to empower, not overwhelm you. Take a deep breath, and let's get into where these problematic protein particles lurk.
Natural Flavors: The Ultimate Mystery Ingredient
"Natural flavorings" often contain trace amounts of the top infant food allergies, like corn, soy, and dairy [6]. You'll find these flavorings in tons of products, from sauces to seasonings. Sorry; we know this one really stings.
Here's what makes natural flavors extra frustrating: they can contain soy oil, soy lecithin (which research shows can harbor soy protein fragments that may trigger reactions in highly sensitive individuals), dairy derivatives, corn components, and basically anything derived from nature [7]. It's like ingredient roulette where you never know what you're getting.
Confusing Protein Names
Another problem? Uncommon names for food proteins. For example, did you know that egg protein can be labeled as "lysozyme" and "albumin"? [8] (As if label-reading wasn't already a drain...) Since the smallest protein particles can cause a reaction if your baby has food allergies, not knowing these terms can spike your stress.
Common protein aliases include:
Dairy: casein, whey, lactalbumin, lactoglobulin
Soy: lecithin, tocopherol, hydrolyzed vegetable protein
Egg: albumin, lysozyme, ovalbumin
Wheat: modified food starch, hydrolyzed wheat protein, vital wheat gluten
Cross-Contamination: The Silent Saboteur
Cross-contamination adds another headache to your already-busy mind. Have you found "safe" deli meat? Well, get ready to be the person who says, "clean the machine and change your gloves please." If they cut cheese and deli meat with the same slicer then those trace amounts of dairy in breast milk can cause a reaction in some babies.
Manufacturing facilities present similar risks. Products processed on shared equipment can carry trace amounts of allergens, even when they're not listed in ingredients [9]. This is why you'll see "may contain" warnings, though these aren't required by law and many companies don't use them consistently.
Surprising Places Food Proteins Hide
Prepare yourself, food proteins show up in the most unexpected places:
Personal Care Products:
Shampoos (wheat proteins for "strengthening")
Lotions (oat proteins for soothing)
Lip balms (dairy derivatives for moisturizing)
Household Items:
Detergents (enzymes derived from common allergens)
Pet food (which you handle, then touch your face)
Play-Doh and craft supplies
Medications and Supplements:
Prescription medications (lactose as a filler)
Vitamins (soy-derived vitamin E)
Over-the-counter medications (corn starch as a binder)
Foods You'd Never Suspect:
Processed meats (milk proteins used as binders)
Wine and beer (egg whites or milk used in clarification)
French fries (often contain beef flavoring or dairy)
Non-dairy coffee creamers (often contain casein)
We know it's a lot to take in, but remember you are not alone.

The Label Loophole That's Making Your Life Harder
Here's something that'll make your blood boil: those "soy free," "dairy free," and "nut free" labels on packages? They're about as reliable as a weather forecast. The FDA doesn't actually enforce these claims unfortunately, they're basically fancy marketing with zero regulatory teeth behind them [10].
Want to know what's wild? "Gluten free" is literally the ONLY label claim with actual FDA requirements and enforcement [11] and even that allows for certain threshold amounts to be present. Everything else is the wild west of food labeling.
This means a product labeled "dairy free" could still contain casein, whey, or other milk derivatives that absolutely can trigger reactions in sensitive babies. It's infuriating, but knowing this helps you stay vigilant.
What To Do if You Discover You’ve Been Consuming a Hidden Allergen
After you ugly cry (understandably, we've been there) you’ll probably cry a little more. Whether it’s been a week or a month, finding out you’ve been consuming a hidden allergen feels like the biggest failure as a parent. You’ve sacrificed so much and changed your life drastically to keep your baby healthy, all to feel like it was for nothing.
It was an accident. You’re human. Forgive yourself. Please!
Understand it's only a small part of being a food allergy parent and one setback on your journey. Most parents want to know what to do right away, for good reason.
This answer is a little more complicated, but we can share some helpful tips:
First: Don't Panic About Timing
Understand that it does not take weeks for proteins to leave your breastmilk [12]. This myth alone makes our blood boil and confuses so many parents. Most proteins clear from your system within hours and you can deep dive into the research data behind transfer and clearance here: What Is the Truth About How Long Proteins Last in Your Breastmilk?
Second: This May Be Harder on You Than Your Baby
Of course, any reaction is horrible, but there is a solution to finding hidden allergens. The guilt and frustration you're feeling is completely normal, but remember that discovering hidden allergens is actually progress and you're getting closer to identifying all your baby's triggers.
Third: Get Back to Basics
Many processed and packaged foods are a source of hidden allergens. Eating fresh whole foods, like fruits and vegetables, reduces the chance that you are eating anything "hidden" that could potentially hurt your baby. We know this limits convenience (we seriously aren't trying to suck any more joy out of your life). Importantly, it can help you get to baseline faster.
Fourth: Document Everything
Keep a detailed food and symptom diary. Note what you ate, when you ate it, and any symptoms your baby experienced. This information becomes invaluable when working with healthcare providers or allergy experts to identify patterns. We have a full team of providers who specialize in food reactivity!
Having a slip-up or finding out you've been eating a hidden allergen flat out sucks. But remember all the other good you're doing for your baby. You really are incredible!

When "Free From" Labels Aren't Actually Free
The lack of regulation around allergen-free claims creates a minefield for families dealing with food reactivity. Research shows that products claiming to be "free from" specific allergens can still contain detectable levels of those very allergens [13].
This happens because:
Manufacturing facilities often process multiple allergens on shared equipment
Suppliers may change ingredients without notice
Cross-contamination during transportation and storage
Regulatory loopholes allow trace amounts
Your best defense? Read every ingredient list, every time, even for products you've used before. Companies reformulate products regularly, and what was safe last month might not be safe today.
The Bottom Line: You're Not Going Crazy
If you feel like hidden allergens are everywhere, making your life impossibly complicated, you're not imagining it. The current food labeling system wasn't designed with highly sensitive infants in mind, and the lack of regulation around many allergen-free claims creates real challenges for families like yours.
But here's what you need to know: thousands of families successfully navigate this challenge every day. With the right support, knowledge, and strategies, you can too.
Ready to Get Answers and Move Forward?
We're food allergy experts here to get your family answers. We can't tell you how many Free to Feed parents learn they've been accidentally eating hidden allergens. Even with helpful lists and trying your best, they can sneak by.
It IS possible to breastfeed your baby with food allergies — we can help.
Our expert consultants have directly guided over 10,000 parents to successfully resolve their infant food allergy symptoms and reach their feeding goals. Whether you need help identifying hidden allergens, creating a personalized elimination plan, or just want support from someone who truly understands what you're going through, we're here for you.
Book a 1:1 consultation with one of our allergy experts today and get the personalized guidance your family deserves. After your consultation, you'll receive a complete toolkit of evidence-based resources, including allergen identification guides, meal planning templates, and ongoing support through our community and Virtual Allergy Navigation Assistant.
You don't have to figure this out alone. Let's get your family the answers you need.
References
[1] Sicherer, Scott H., and Hugh A. Sampson. "Food allergy: A review and update on epidemiology, pathogenesis, diagnosis, prevention, and management." Journal of Allergy and Clinical Immunology 141.1 (2018): 41-58.
[2] Gendel, Steven M. "Comparison of international food allergen labeling regulations." Regulatory Toxicology and Pharmacology 63.2 (2012): 279-285.
[3] U.S. Food and Drug Administration. "Food Allergies: What You Need to Know." FDA.gov, 2021.
[4] Katz, Yitzhak, et al. "Early exposure to cow's milk protein is protective against IgE-mediated cow's milk protein allergy." Journal of Allergy and Clinical Immunology 126.1 (2010): 77-82.
[5] Motosue, Megan S., et al. "Increasing incidence of anaphylaxis in Olmsted County: a population-based study." Journal of Allergy and Clinical Immunology 140.4 (2017): 1244-1250.
[6] Taylor, Steve L., et al. "Food allergen advisory labeling and product testing." Food and Chemical Toxicology 42.9 (2004): 1431-1437.
[7] Holzhauser, Thomas, et al. "Soybean (Glycine max) allergy in Europe: Gly m 5 (β-conglycinin) and Gly m 6 (glycinin) are potential diagnostic markers for severe allergic reactions to soy." Journal of Allergy and Clinical Immunology 123.2 (2009): 452-458.
[8] Mine, Yoshinori, and Fengyi Yang. "Recent advances in the understanding of egg allergens: basic, industrial, and clinical perspectives." Journal of Agricultural and Food Chemistry 56.13 (2008): 4874-4900.
[9] Hefle, Susan L., et al. "Consumer attitudes and risks associated with packaged food allergen advisory labeling." Journal of Allergy and Clinical Immunology 120.6 (2007): 1398-1402.
[10] Jackson, Lana S., et al. "Cleaning and other control and validation strategies to prevent allergen cross-contact in food-processing operations." Journal of Food Protection 71.2 (2008): 445-458.
[11] U.S. Food and Drug Administration. "Gluten-Free Labeling of Foods." Federal Register 78.150 (2013): 47154-47179.
[12] Vadas, Peter, et al. "Detection of peanut allergens in breast milk of lactating women." JAMA 285.13 (2001): 1746-1748.
[13] Remington, Brett C., et al. "Updated population minimal eliciting dose distributions for use in risk assessment of 14 priority food allergens." Food and Chemical Toxicology 156 (2021): 112519.



